Download e-book for kindle: Java for Bioinformatics and Biomedical Applications by Harshawardhan Bal

By Harshawardhan Bal

ISBN-10: 0387372350

ISBN-13: 9780387372358

Scientific technology and perform have gone through primary adjustments within the final five years, as large-scale genome initiatives have ended in the sequencing of a couple of vital microbial, plant and animal genomes. This ebook goals to mix usual software program engineering and layout ideas with genomics, bioinformatics and melanoma study. instead of an workout in studying a programming platform, the textual content makes a speciality of necessary analytical instruments for the medical group.

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The invalid BLAST options are disabled. b. The input information is a valid GenBank id (also called the GI number). In this case, the application downloads the sequence from GenBank and displays it in the appropriate format as stated above. 2. User submits the sequence to the NCBI BLAST server. ) and hits the "Submit" button. This sends the sequence to the NCBI BLAST server for the search operation. A;5T i"e:su» in a yixi|ihital tamat Fig. 5. UML diagram for the SwingBlast use cases The last use case ("User wants to browse the BLAST results in a graphical format") arises from a need to view the BLAST output, that is, the list of sequences from the database that matched the input sequence in a graphical and interactive fashion.

Java and is based on a 3-tier architecture using Java servlets and Java Server Pages (JSP). We will learn more about the Java servlets and JSP technology in chapter 4. Briefly, servlets and JSP provide a server and platform independent mechanism to create web-based applications that can serve dynamic web content. CaTissue Core, caTissue Clinical Annotation Engine and caTIES The simple research scenario we outlined earlier assumes that researchers can locate the biospecimens or tissues samples with the matching disease pathology or disease parameters so to perform the necessary follow-up and validation studies.

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Java for Bioinformatics and Biomedical Applications by Harshawardhan Bal

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